GENE VIEW

MOUSE GENE INFORMATION [PubMed]
Description collagen, type IX, alpha 3
Synonyms
Chromosome 2
Genetic Map Distance 103.14 cM
RefSeq Accessions NM_009936; NP_034066
NCBI Entrez Gene 12841 at chr2:180332927-180356890 (mm9) / chr2:180597795-180622185 (mm10)
Ensembl Gene ENSMUSG00000027570
VEGA Gene OTTMUSG00000016344
MGI Gene MGI:894686
Mouse Protein (8)
UniProt ID Description Length (AA) Predicted # TMs
A2ACT7 Procollagen type IX alpha 3 680 0
Q14C48 Col9a3 protein 48 0
Q61248 Alpha 3 type IX collagen (Fragment) 145 0
Q8BSX1 Putative uncharacterized protein 680 0
Q8K2L1 Col9a3 protein 383 0
Q8VHY3 Alpha-3 type IX collagen (Fragment) 662 0
Q9CTK5 Putative uncharacterized protein (Fragment) 155 0
Q9JKK4 Collagen type IX alpha 3 (Fragment) 244 0
Pfam Domains Collagen; Collagen; Collagen; Collagen; Collagen; Pfam-B_5239; Pfam-B_544; Pfam-B_5239; Pfam-B_544; Collagen; Pfam-B_5239; Collagen; Pfam-B_544; Pfam-B_544; Collagen
Mouse alleles (1)
Allele Name Allele Type
Col9a3tm1(KOMP)Wtsi KOMP-CSD-Project
Human Homolog COL9A3 (collagen, type IX, alpha 3)
Human synonyms DJ885L7.4.1; EDM3; IDD; MED
Human cytoband 20q13.3
Known deafness gene No
Within mapped deafness loci DFNB65
Associated Human Disease in OMIM
Chicken homolog (1)
ENSGALG00000005628 (CO9A3_CHICK) encoding ENSGALP00000009015
Gene Ontology
Cellular Component (2) collagen; collagen type IX
FACS-Sorted Hair Cells
Data | Chart
E16a
E16b
P0
P4
P7
P16
Utricle GFP+ cells
91
141
45
18
75
6
Cochlea GFP+ cells
111
497
84
227
97
NA
Utricle GFP- cells
797
811
2323
2797
6670
519
Cochlea GFP- cells
283
525
1391
2251
2408
NA
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
GFP-
1889
GFP+
126
0.07
0.00039
Utricle
1191
Cochlea
787
0.66
1
Embryonic
407
Postnatal
1351
3.32
0.382
Adult Cochlear Inner and Outer Hair Cells
Probeset ID IHC (mean ± sd) OHC (mean ± sd) [OHC replicate] Fold Change (OHC/IHC) False Discovery Rate (FDR)
17380813 21.13 ± 0.00 20.03 ± 3.37 [12.95] 0.95 0.629
Otic Progenitor Cells
Data
Growth Factor
Replicate 1
Replicate 2
Replicate 3
Mean
bFGF
1527
1616
2119
1357
No bFGF
2603
2771
3248
4491
EGF
632
728
854
738
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
bFGF
1357
No bFGF
4491
3.31
0.00032
bFGF
1357
EGF
738
0.54
1.43e-9
No bFGF
4491
EGF
738
0.16
4.4e-94
Chicken Stereocilium Proteomics
The chicken protein was not reproducibly detected in the chicken stereocilia.
Auditory and Vestibular Ganglion Neurons
Probe set ID: 1460693_a_at
Age E12 E13 E16 P0 P6 P15
Spiral ganglion
Replicate 1 282.74 648.62 1927.37 4106.9 8760.73 3264.53
Replicate 1 Call P P P P P P
Replicate 2 337.88 542.48 2150.7 4001 4002.82 2540.17
Replicate 2 Call P P P P P P
Replicate 3 388 499.51 2425.56 3100.42 8810.87 3216.43
Replicate 3 Call P P P P P P
Replicate 4 2028.28 2535.24 8516 2605.74
Replicate 4 Call P P P P
Mean 336.21 563.54 2132.98 3435.89 7522.61 2906.72
Standard Deviation 52.65 76.75 215.37 751.29 2350.06 386.82
Log2 Mean 8.38 9.13 11.05 11.72 12.81 11.5
Log2 Standard Deviation 0.23 0.19 0.14 0.33 0.56 0.19
 
Vestibular ganglion
Replicate 1 377.96 869.64 2013.25 2469.22 2299.33 2166.59
Replicate 1 Call P P P P P P
Replicate 2 481.34 871.03 2108.46 2510.47 4485.78 1998.47
Replicate 2 Call P P P P P P
Replicate 3 427.55 1029.51 1490.31 1736.76 3428.06 1748.52
Replicate 3 Call P P P P P P
Mean 428.95 923.39 1870.67 2238.82 3404.39 1971.19
Standard Deviation 51.7 91.9 332.83 435.28 1093.42 210.37
Log2 Mean 8.74 9.85 10.85 11.11 11.68 10.94
Log2 Standard Deviation 0.17 0.14 0.27 0.3 0.49 0.16
Probe set ID: 1460734_at
Age E12 E13 E16 P0 P6 P15
Spiral ganglion
Replicate 1 261.12 380.81 1376.74 2361.41 5059.39 1745.89
Replicate 1 Call A A P P P P
Replicate 2 314.96 447.57 1223.89 2439.72 2320.97 1299.29
Replicate 2 Call A A A P P A
Replicate 3 301.73 441.79 1526.59 1630.88 5620.97 1624.11
Replicate 3 Call A A P A P M
Replicate 4 1226.99 1489.05 5582.87 1411.44
Replicate 4 Call A P P A
Mean 292.6 423.39 1338.55 1980.27 4646.05 1520.18
Standard Deviation 28.06 36.99 144.23 489.81 1571.09 201.96
Log2 Mean 8.19 8.72 10.38 10.92 12.1 10.56
Log2 Standard Deviation 0.14 0.13 0.15 0.36 0.62 0.19
 
Vestibular ganglion
Replicate 1 364.85 608.65 1017.51 1377.96 1314.75 1459.49
Replicate 1 Call A A A A A P
Replicate 2 381.07 664.71 1069.9 1250.3 3240.76 1451.27
Replicate 2 Call A A A A P A
Replicate 3 422.45 785.38 747.5 868.44 2271.51 1422.63
Replicate 3 Call A A A A P P
Mean 389.46 686.25 944.97 1165.57 2275.67 1444.46
Standard Deviation 29.7 90.31 173.01 265.12 963.01 19.35
Log2 Mean 8.6 9.41 9.87 10.16 11.06 10.5
Log2 Standard Deviation 0.11 0.19 0.28 0.35 0.66 0.02