GENE VIEW

MOUSE GENE INFORMATION [PubMed]
Description paired box 1
Synonyms wavy tail; wt; Pax-1; hunchback; hbs
Chromosome 2
Genetic Map Distance 72.63 cM
RefSeq Accessions NM_008780; NP_032806
NCBI Entrez Gene 18503 at chr2:147190730-147200785 (mm9) / chr2:147361921-147375052 (mm10)
Ensembl Gene ENSMUSG00000037034
VEGA Gene OTTMUSG00000015696
MGI Gene MGI:97485
Mouse Protein (6)
UniProt ID Description Length (AA) Predicted # TMs
P09084 Paired box protein Pax-1 446 0
A2ALK0 Paired box gene 1 (Fragment) 385 0
Q3UZ60 Putative uncharacterized protein 361 0
Q548R5 PAX1 361 0
Q8K4Q1 Pax1 protein (Fragment) 212 0
Q8K4Q2 Pax1 protein (Fragment) 88 0
Pfam Domains PAX; Pfam-B_2293; Pfam-B_1054
Mouse alleles (9)
Allele Name Allele Type
Pax1tm1e(EUCOMM)Wtsi EUCOMM-projects
Pax1tm1(sb-pLHED)Jtak Targeted (knock-in)
Pax1tm1Neu Targeted (knock-out)
Pax1tm2Neu Targeted (Reporter)
Pax1un-ex Spontaneous
Pax1un-i Spontaneous
Pax1un-m Spontaneous
Pax1Un-s Spontaneous
Pax1un Spontaneous
Human Homolog PAX1 (paired box 1)
Human synonyms HUP48
Human cytoband 20p11.2
Known deafness gene No
Within mapped deafness loci No
Associated Human Disease in OMIM
Chicken homolog (0)
Gene Ontology
Biological Process (13) somitogenesis; CD4-positive; alpha-beta T cell differentiation; CD8-positive; alpha-beta T cell differentiation; parathyroid gland development; thymus development; bone morphogenesis; pattern specification process; skeletal system development; transcription; DNA-dependent; multicellular organismal development; positive regulation of transcription from RNA polymerase II promoter; regulation of transcription; DNA-dependent; organ morphogenesis
Cellular Component (2) nucleus; transcription factor complex
Molecular Function (3) DNA binding; DNA binding; sequence-specific DNA binding transcription factor activity
FACS-Sorted Hair Cells
Data | Chart
E16a
E16b
P0
P4
P7
P16
Utricle GFP+ cells
13
0
861
106
0
19
Cochlea GFP+ cells
0
0
222
1
0
NA
Utricle GFP- cells
0
4
43
0
0
31
Cochlea GFP- cells
0
19
231
0
0
NA
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
GFP-
30
GFP+
111
3.69
0.00174
Utricle
90
Cochlea
47
0.53
1
Embryonic
4
Postnatal
108
23.44
6.41e-6
Adult Cochlear Inner and Outer Hair Cells
Probeset ID IHC (mean ± sd) OHC (mean ± sd) [OHC replicate] Fold Change (OHC/IHC) False Discovery Rate (FDR)
17377328 11.64 ± 1.03 14.26 ± 0.38 [14.83] 1.22 0.463
Otic Progenitor Cells
Data
Growth Factor
Replicate 1
Replicate 2
Replicate 3
Mean
bFGF
2
5
2
2
No bFGF
4
2
5
3
EGF
0
1
0
0
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
bFGF
2
No bFGF
3
1.13
1
bFGF
2
EGF
0
0.29
0.111
No bFGF
3
EGF
0
0.25
0.0984
Chicken Stereocilium Proteomics
No chicken homolog has been identified for Pax1.
Auditory and Vestibular Ganglion Neurons
Probe set ID: 1443476_at
Age E12 E13 E16 P0 P6 P15
Spiral ganglion
Replicate 1 10.76 6.17 10.07 9.8 8.52 20.37
Replicate 1 Call A A A A A A
Replicate 2 18.71 16.91 4.1 37.18 19.28 24.47
Replicate 2 Call A A A A A A
Replicate 3 49.6 11.87 5.98 25.62 16.24 20.32
Replicate 3 Call A A A A A A
Replicate 4 5.36 26.38 26.42 8.51
Replicate 4 Call A A A A
Mean 26.36 11.65 6.38 24.75 17.62 18.42
Standard Deviation 20.52 5.37 2.58 11.28 7.41 6.89
Log2 Mean 4.43 3.42 2.59 4.48 4.03 4.1
Log2 Standard Deviation 1.12 0.74 0.54 0.83 0.69 0.68
 
Vestibular ganglion
Replicate 1 33.76 25.54 15.19 13.31 25.41 14.82
Replicate 1 Call A A A A A A
Replicate 2 40.17 38.34 20.64 30.92 21.23 6.54
Replicate 2 Call A A A A A A
Replicate 3 2.15 13.8 14.26 17.5 16.48 18.35
Replicate 3 Call A A A A A A
Mean 25.36 25.89 16.7 20.58 21.04 13.24
Standard Deviation 20.35 12.27 3.45 9.2 4.47 6.06
Log2 Mean 3.84 4.57 4.04 4.27 4.37 3.6
Log2 Standard Deviation 2.37 0.74 0.29 0.62 0.31 0.79
Probe set ID: 1449359_at
Age E12 E13 E16 P0 P6 P15
Spiral ganglion
Replicate 1 40.38 47.9 66.26 64.26 31.68 49.18
Replicate 1 Call A A A A A A
Replicate 2 17.34 29.04 65.83 12.85 42.09 21.1
Replicate 2 Call A A A A A A
Replicate 3 47.77 49.07 17.04 36.85 35.46 25.43
Replicate 3 Call A A A A A A
Replicate 4 70.13 21.71 13.5 23.69
Replicate 4 Call A A A A
Mean 35.16 42 54.82 33.92 30.68 29.85
Standard Deviation 15.87 11.24 25.26 22.53 12.24 13.01
Log2 Mean 5.01 5.35 5.58 4.83 4.82 4.81
Log2 Standard Deviation 0.78 0.43 0.99 1 0.73 0.55
 
Vestibular ganglion
Replicate 1 69.17 30.32 35.36 71.33 31.11 46.66
Replicate 1 Call A A A A A A
Replicate 2 50.93 39.74 46.31 61.67 38.23 58.6
Replicate 2 Call A A A A A A
Replicate 3 60.67 56.2 36.16 55.52 16.69 31.45
Replicate 3 Call A A A A A A
Mean 60.26 42.09 39.28 62.84 28.68 45.57
Standard Deviation 9.13 13.1 6.1 7.97 10.97 13.61
Log2 Mean 5.9 5.35 5.28 5.97 4.76 5.46
Log2 Standard Deviation 0.22 0.45 0.22 0.18 0.62 0.45