GENE VIEW

MOUSE GENE INFORMATION [PubMed]
Description Ly6/Plaur domain containing 1
Synonyms Lynx2; C530008O16Rik; 2700050C12Rik
Chromosome 1
Genetic Map Distance 54.70 cM
RefSeq Accessions NM_145100; NP_659568
NCBI Entrez Gene 72585 at chr1:127768616-127808791 (mm9) / chr1:125871408-125913171 (mm10)
Ensembl Gene ENSMUSG00000026344
VEGA Gene OTTMUSG00000030265
MGI Gene MGI:1919835
Mouse Protein (2)
UniProt ID Description Length (AA) Predicted # TMs
Q8BLC3 Ly6/PLAUR domain-containing protein 1 141 0
E0CXP0 Uncharacterized protein 89 0
Pfam Domains
Mouse alleles (4)
Allele Name Allele Type
Lypd1tm1a(KOMP)Wtsi KOMP-CSD-Project
Lypd1tm1.1Tmj Targeted (knock-out)
Lypd1tm1Lex Targeted (knock-out)
Lypd1tm1Tmj Targeted (Floxed/Frt)
Human Homolog LYPD1 (LY6/PLAUR domain containing 1)
Human synonyms LYPDC1; PHTS
Human cytoband 2q21.2
Known deafness gene No
Within mapped deafness loci DFNB58
Associated Human Disease in OMIM
None
Chicken homolog (2)
ENSGALG00000012176 (LYPD1) encoding ENSGALP00000019856
ENSGALG00000012176 (LYPD1) encoding ENSGALP00000037073
Gene Ontology
Cellular Component (3) membrane; anchored to membrane; plasma membrane
FACS-Sorted Hair Cells
Data | Chart
E16a
E16b
P0
P4
P7
P16
Utricle GFP+ cells
13
1
0
11
1
19
Cochlea GFP+ cells
3
6
12
0
0
NA
Utricle GFP- cells
2
2
16
0
0
0
Cochlea GFP- cells
9
16
6
37
105
NA
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
GFP-
17
GFP+
6
0.35
0.425
Utricle
5
Cochlea
19
3.49
0.65
Embryonic
6
Postnatal
15
2.15
0.721
Adult Cochlear Inner and Outer Hair Cells
Probeset ID IHC (mean ± sd) OHC (mean ± sd) [OHC replicate] Fold Change (OHC/IHC) False Discovery Rate (FDR)
17226435 16.50 ± 1.63 19.45 ± 1.50 [20.85] 1.18 0.504
Otic Progenitor Cells
Data
Growth Factor
Replicate 1
Replicate 2
Replicate 3
Mean
bFGF
11
11
12
8
No bFGF
18
13
28
18
EGF
36
41
42
40
Analysis
Condition A
Mean A
Condition B
Mean B
Fold Change (B/A)
False Discovery Rate (FDR)
bFGF
8
No bFGF
18
2.03
1
bFGF
8
EGF
40
4.52
4.4e-6
No bFGF
18
EGF
40
2.23
0.00305
Chicken Stereocilium Proteomics
The chicken protein was not reproducibly detected in the chicken stereocilia.
Auditory and Vestibular Ganglion Neurons
Probe set ID: 1431569_a_at
Age E12 E13 E16 P0 P6 P15
Spiral ganglion
Replicate 1 497.11 961.3 3471.95 3110.78 2142.68 1771.72
Replicate 1 Call P P P P P P
Replicate 2 485.51 989.02 3491.66 1895.73 3344.31 1330.07
Replicate 2 Call P P P P P P
Replicate 3 528.5 1229.64 2074.3 3794.83 827.35 3887.52
Replicate 3 Call P P P P P P
Replicate 4 3280.35 3857.92 546.57 3925
Replicate 4 Call P P P P
Mean 503.71 1059.99 3079.57 3164.82 1715.23 2728.58
Standard Deviation 22.24 147.58 676.92 911.19 1289.79 1371.86
Log2 Mean 8.98 10.04 11.56 11.57 10.39 11.26
Log2 Standard Deviation 0.06 0.19 0.36 0.48 1.21 0.8
 
Vestibular ganglion
Replicate 1 954.68 1684.45 762.79 652.45 543.95 2427.03
Replicate 1 Call P P P P P P
Replicate 2 906.03 1401.4 1011.01 817.63 723.88 2378.72
Replicate 2 Call P P P P P P
Replicate 3 849.69 1576.26 442.65 950.92 646.51 2168.25
Replicate 3 Call P P P P P P
Mean 903.47 1554.04 738.82 807 638.11 2324.67
Standard Deviation 52.54 142.83 284.94 149.52 90.26 137.6
Log2 Mean 9.82 10.6 9.45 9.64 9.31 11.18
Log2 Standard Deviation 0.08 0.13 0.61 0.27 0.21 0.09