MOUSE GENE INFORMATION [PubMed]
Description | calcium and integrin binding family member 2 | ||||||||||||
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Synonyms | calcium binding protein Kip2; 2810434I23Rik | ||||||||||||
Chromosome | 9 | ||||||||||||
Genetic Map Distance | 29.70 cM | ||||||||||||
RefSeq Accessions | NM_019686; NP_062660 | ||||||||||||
NCBI Entrez Gene | 56506 at chr9:54393159-54407886 (mm9) / chr9:54545352-54560079 (mm10) | ||||||||||||
Ensembl Gene | ENSMUSG00000037493 | ||||||||||||
VEGA Gene | OTTMUSG00000030276 | ||||||||||||
MGI Gene | MGI:1929293 | ||||||||||||
Mouse Protein (2) |
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Pfam Domains | efhand; efhand; efhand | ||||||||||||
Mouse alleles (3) |
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Human Homolog | CIB2 (calcium and integrin binding family member 2) | ||||||||||||
Human synonyms | KIP2 | ||||||||||||
Human cytoband | 15q24 | ||||||||||||
Known deafness gene | DFNB48/USH1J | ||||||||||||
Within mapped deafness loci | DFNB48; USH3L | ||||||||||||
Associated Human Disease in OMIM |
None
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Chicken homolog (1) |
ENSGALG00000003312 (CIB2) encoding ENSGALP00000005238
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Gene Ontology
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FACS-Sorted Hair Cells
Data |
Chart
E16a |
E16b |
P0 |
P4 |
P7 |
P16 |
|
---|---|---|---|---|---|---|
Utricle GFP+ cells |
550 |
106 |
220 |
482 |
604 |
156 |
Cochlea GFP+ cells |
93 |
44 |
460 |
1755 |
2115 |
NA |
Utricle GFP- cells |
17 |
8 |
4 |
23 |
15 |
0 |
Cochlea GFP- cells |
16 |
1 |
6 |
14 |
6 |
NA |
Analysis
Condition A |
Mean A |
Condition B |
Mean B |
Fold Change (B/A) |
False Discovery Rate (FDR) |
---|---|---|---|---|---|
GFP- |
10 |
GFP+ |
599 |
57.16 |
2.38e-11 |
Utricle |
182 |
Cochlea |
451 |
2.47 |
0.87 |
Embryonic |
104 |
Postnatal |
419 |
3.99 |
0.00177 |
Adult Cochlear Inner and Outer Hair Cells
Probeset ID | IHC (mean ± sd) | OHC (mean ± sd) [OHC replicate] | Fold Change (OHC/IHC) | False Discovery Rate (FDR) |
---|---|---|---|---|
17527261 | 342.39 ± 20.06 | 303.04 ± 35.36 [367.87] | 0.89 | 0.511 |
Otic Progenitor Cells
Data
Growth Factor |
Replicate 1 |
Replicate 2 |
Replicate 3 |
Mean |
---|---|---|---|---|
bFGF |
189 |
222 |
183 |
150 |
No bFGF |
203 |
205 |
186 |
188 |
EGF |
202 |
166 |
154 |
174 |
Analysis
Condition A |
Mean A |
Condition B |
Mean B |
Fold Change (B/A) |
False Discovery Rate (FDR) |
---|---|---|---|---|---|
bFGF |
150 |
No bFGF |
188 |
1.25 |
1 |
bFGF |
150 |
EGF |
174 |
1.16 |
0.457 |
No bFGF |
188 |
EGF |
174 |
0.93 |
0.764 |
Chicken Stereocilium Proteomics
The chicken protein was not reproducibly detected in the chicken stereocilia. |
Auditory and Vestibular Ganglion Neurons
Probe set ID: 1422852_at
Age | E12 | E13 | E16 | P0 | P6 | P15 |
---|---|---|---|---|---|---|
Spiral ganglion | ||||||
Replicate 1 | 1158.5 | 277.21 | 1509.82 | 1262.19 | 890.08 | 438.19 |
Replicate 1 Call | P | A | P | P | P | A |
Replicate 2 | 1307.1 | 278.22 | 1109.26 | 587.55 | 1058.64 | 599.52 |
Replicate 2 Call | P | A | P | M | P | A |
Replicate 3 | 1373.18 | 408.22 | 2066.77 | 1150.56 | 869.99 | 1022.08 |
Replicate 3 Call | P | P | P | P | P | M |
Replicate 4 | 826.12 | 1219.52 | 718.39 | 768.96 | ||
Replicate 4 Call | A | P | A | A | ||
Mean | 1279.59 | 321.22 | 1377.99 | 1054.96 | 884.28 | 707.19 |
Standard Deviation | 109.95 | 75.35 | 538.07 | 314.98 | 139.23 | 249.62 |
Log2 Mean | 10.32 | 8.3 | 10.34 | 9.98 | 9.77 | 9.4 |
Log2 Standard Deviation | 0.13 | 0.32 | 0.57 | 0.52 | 0.23 | 0.52 |
Vestibular ganglion | ||||||
Replicate 1 | 668.88 | 476.67 | 319.08 | 466.56 | 420.53 | 875.06 |
Replicate 1 Call | P | P | A | A | A | A |
Replicate 2 | 768.76 | 573.17 | 382.9 | 357.54 | 458.25 | 1062.59 |
Replicate 2 Call | P | P | A | A | A | A |
Replicate 3 | 702.9 | 512 | 313.31 | 435.73 | 378.15 | 888.51 |
Replicate 3 Call | P | P | A | A | A | P |
Mean | 713.51 | 520.61 | 338.43 | 419.94 | 418.98 | 942.05 |
Standard Deviation | 50.78 | 48.82 | 38.62 | 56.2 | 40.07 | 104.6 |
Log2 Mean | 9.48 | 9.02 | 8.4 | 8.71 | 8.71 | 9.87 |
Log2 Standard Deviation | 0.1 | 0.13 | 0.16 | 0.2 | 0.14 | 0.16 |
Probe set ID: 1447770_at
Age | E12 | E13 | E16 | P0 | P6 | P15 |
---|---|---|---|---|---|---|
Spiral ganglion | ||||||
Replicate 1 | 45.8 | 24.42 | 27.13 | 31.07 | 6.84 | 37.71 |
Replicate 1 Call | A | A | A | A | A | A |
Replicate 2 | 27.36 | 26.95 | 18.93 | 27.71 | 17.32 | 41.76 |
Replicate 2 Call | A | A | A | A | A | A |
Replicate 3 | 27.61 | 33.73 | 24.16 | 22.59 | 27.7 | 13.8 |
Replicate 3 Call | A | A | A | A | A | A |
Replicate 4 | 12.04 | 8.1 | 19.87 | 44.96 | ||
Replicate 4 Call | A | A | A | A | ||
Mean | 33.59 | 28.37 | 20.57 | 22.37 | 17.93 | 34.56 |
Standard Deviation | 10.57 | 4.81 | 6.62 | 10.13 | 8.61 | 14.15 |
Log2 Mean | 5.03 | 4.81 | 4.3 | 4.32 | 4 | 4.97 |
Log2 Standard Deviation | 0.43 | 0.24 | 0.52 | 0.89 | 0.86 | 0.8 |
Vestibular ganglion | ||||||
Replicate 1 | 24.67 | 10.19 | 26.27 | 27.52 | 53.99 | 34.78 |
Replicate 1 Call | A | A | A | A | A | A |
Replicate 2 | 34.73 | 15.1 | 22.86 | 36.26 | 42.03 | 37.35 |
Replicate 2 Call | A | A | A | A | A | A |
Replicate 3 | 20 | 5.27 | 32.68 | 36.32 | 50.17 | 23.66 |
Replicate 3 Call | A | A | A | A | A | A |
Mean | 26.47 | 10.19 | 27.27 | 33.37 | 48.73 | 31.93 |
Standard Deviation | 7.53 | 4.92 | 4.99 | 5.06 | 6.11 | 7.28 |
Log2 Mean | 4.69 | 3.22 | 4.75 | 5.05 | 5.6 | 4.97 |
Log2 Standard Deviation | 0.4 | 0.77 | 0.26 | 0.23 | 0.19 | 0.35 |
Probe set ID: 1459833_x_at
Age | E12 | E13 | E16 | P0 | P6 | P15 |
---|---|---|---|---|---|---|
Spiral ganglion | ||||||
Replicate 1 | 29.74 | 26.54 | 29.94 | 35.17 | 46.05 | 23.01 |
Replicate 1 Call | A | A | A | A | A | A |
Replicate 2 | 38.2 | 23.41 | 23.11 | 23.42 | 26.21 | 21.14 |
Replicate 2 Call | A | A | A | A | A | A |
Replicate 3 | 42.2 | 22.9 | 24.18 | 35.28 | 28.53 | 26.49 |
Replicate 3 Call | A | A | A | A | A | A |
Replicate 4 | 22.22 | 31.16 | 14.84 | 31.27 | ||
Replicate 4 Call | A | A | A | A | ||
Mean | 36.71 | 24.28 | 24.86 | 31.26 | 28.91 | 25.48 |
Standard Deviation | 6.36 | 1.97 | 3.48 | 5.57 | 12.9 | 4.45 |
Log2 Mean | 5.18 | 4.6 | 4.63 | 4.95 | 4.74 | 4.66 |
Log2 Standard Deviation | 0.26 | 0.11 | 0.19 | 0.28 | 0.67 | 0.25 |
Vestibular ganglion | ||||||
Replicate 1 | 43.5 | 14.83 | 18.67 | 17.95 | 47.1 | 19.99 |
Replicate 1 Call | A | A | A | A | A | A |
Replicate 2 | 49.03 | 3.68 | 11.17 | 26.98 | 31.91 | 57.8 |
Replicate 2 Call | A | A | A | A | A | A |
Replicate 3 | 23.97 | 12.01 | 22.44 | 15.51 | 44.6 | 39.64 |
Replicate 3 Call | A | A | A | A | A | A |
Mean | 38.83 | 10.17 | 17.43 | 20.15 | 41.2 | 39.14 |
Standard Deviation | 13.17 | 5.8 | 5.74 | 6.04 | 8.14 | 18.91 |
Log2 Mean | 5.21 | 3.12 | 4.06 | 4.29 | 5.34 | 5.16 |
Log2 Standard Deviation | 0.55 | 1.08 | 0.52 | 0.41 | 0.3 | 0.78 |